Dataset: B-GOOD Genotyping SMR
Dataset tables
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Supplemental Files
Any supplemental files, not containing data.
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Dataset Report
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This file contains in detail the structure of the dataset.
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This is a generated file.
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Licence
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This file contains dataset licencing information.
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This is a generated file.
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Readme
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The file contains basic information about the dataset.
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This is a generated file.
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Abstract
Dataset containing data on SMR genotyping for eight SNP, as part of tier 1, tier 2 and tier 3 studies performed in 2022. It was published by De Smet L (UGENT) on the B-GOOD Bee Health Data Portal as part of the B-GOOD project (grant agreement 817622), funded under the EU Horizon 2020 Research and Innovation Programme.
Executive summary
Data overview
The data was published by De Smet L on the B-GOOD Bee Health Data Portal as part of the B-GOOD project (grant agreement 817622), funded under the EU Horizon 2020 Research and Innovation Programme. It contains data data on SMR genotyping for eight SNP as part of tier 1, tier 2 and tier 3 studies performed in 2022.
Data value
The objectives of the B-GOOD project were: (1) Facilitate decision making for beekeepers and other stakeholders by establishing ready-to-use tools for operationalising the HSI; (2) Test, standardise and validate methods for measuring and reporting selected indicators affecting bee health; (3) Explore the various socio-economic and ecological factors beyond bee health; (4) Foster an EU community to collect and share knowledge related to honey bees and their environment; (5) Engender a lasting learning and innovation system (LIS); (6) Minimise the impact of biotic and abiotic stressors.
Data description
Data application
Currently, the data integrated from the B-GOOD Bee Health Data Portal contains major issues and does not comply with the FAIR Guiding Principles for scientific data management and stewardship applied on the EU Pollinator Hub. More descriptive information about the context, quality and condition, or characteristics of the data (e.g. protocols, measurement devices used, units of the captured data, or any other details about the study) must be provided. More metadata in the form of accurate and relevant attributes (*e.g. *metadata that describes the scope of the data has been described, any particularities or limitations about the data that other users should be aware of, specification of the date of generation/collection of the data, the lab conditions, who prepared the data, the parameter settings, the name and version of the software used, specification of whether it is raw or processed data, explanation of all variable names are explained if they are not self-explanatory) must be provided. The dataset requires major revision by the data provider.
Unresolved issues
Introduction
Material and methods
Data acquisition
All raw data files were downloaded from the B-GOOD Bee Health Data Portal on 2024-09-26 18:16:43.
List of raw data obtained from the data provider.
- File data.xlsxx accessed on 2024-09-26 18:16:43, provided by B-GOOD Bee Health Data Portal
Metadata was obtained from the dataset's web page.
Data preparation
All files in the zip-archives were extracted using File Explorer (Microsoft Corporation, version 22H2).
File results-genotyping-pooled-workers-b-good.xlsx was procesed with MS Excel (Microsoft Corporation, version 2409). The worksheet was exported in CSV format (utf-8 encoding) and imported into Notepad++ (version 8.7) where missing values were substituted by {NULL} using regular expressions and decimal points were converted to a baseline dot using regular expression ((?<=\d),(?=\d) replaced with .).
Data was then exported to the respective preparatory files and uploaded to the EU Pollinator Hub according to SOP-017 (Dataset integration.
Data validation
No data validation was performed.
Data analysis
No data analysis was performed.
References
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De Smet L. 2024 SMR genotyping Tier1 Tier2 Tier3. B-GOOD Bee Health Data Portal. [2024-11-4] beehealthdata.org
Reviewed by
Rubinigg Michael as Data scientist- For column OVERALL it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column Nummer it is unclear what it contains. The data provider is requested to make this information available.
- For column SAMPLE it is unclear what it contains. The data provider is requested to make this information available.
- For column VT_SNP1_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP2_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP3_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP4_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP5_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP6_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP7_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column VT_SNP8_COR it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column season it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column sent_from it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column partner it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column general_condition it is unclear what it contains. The data provider is requested to make this information available.
- For column Varroa/100 bees it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.
- For column Country it may be guessed but it is not explicitly stated by the data provider what it contains. The data provider is requested to make this information available.