pms:quantificationCycle

Depending on the real-time instrument, either threshold cycle (Ct), crossing point (Cp) or a take-off point (Top) are used to refer to the same quantification cycle value (Cq): the fractional PCR cycle at which the target is quantified in a given sample. It was proposed to use the term quantification cycle (Cq) in accordance with the data standard RDML (Real-Time PCR Data Markup Language)

References

  1. Lefever S., Hellemans J., Pattyn F., Przybylski DR., Taylor C., Geurts R. et al. 2009 RDML: structured language and reporting guidelines for real-time quantitative PCR data. Nucleic Acids Research. Vol. 37, (7) pp. 2065-2069. doi: 10.1093/nar/gkp056
  2. Bustin SA., Benes V., Garson JA., Hellemans J., Huggett J., Kubista M. et al. 2009 The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments. Clinical Chemistry. Vol. 55, (4) pp. 611-622. doi: 10.1373/clinchem.2008.112797

Related Data

Columns

No descriptor relatables

Properties

Label

quantificationCycle

EUPH UID

[0.0.QNTFC467]

IRI

https://app.pollinatorhub.eu/vocabulary/descriptors/0.0.QNTFC467

EUPH IRI

https://app.pollinatorhub.eu/vocabulary/descriptors/0.0.QNTFC467

Data types

Decimal (float)

Unit

no.

Deprecated

No

Published

2024-10-08

Updated

2025-02-08
Descriptor relationships

Namespace

pms

Class

quantification cycle (Cq)

Dependencies

genetics
Statistic

Number of datasets

2

Number of columns

26

Number of data points

0
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